Figure 2
From: Using optical mapping data for the improvement of vertebrate genome assemblies
GenomeBuilder results of optical mapping analysis of the chicken genome assembly Galgal4.1 visualised in gEVAL [25]. (A) List view of possible joins. A negative gap size indicates that the currently separated scaffolds should overlap. (B) Genome view of first listed issue showing the current gap and additional evidence to support an overlap of the neighbouring scaffolds. The self comparison of genome sequence, cDNA alignments and BAC/fosmid end alignments indicate repeated sequence around the gap. Repetitive end alignments of the same BAC/fosmid end are highlighted in purple. Incorrect distance between ends of the same BAC/fosmid are highlighted in orange.