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Table 2 BLASR/LAST read mapping statistics to genus and species levels from bacterial and viral reads

From: Bacterial and viral identification and differentiation by amplicon sequencing on the MinION nanopore sequencer

Mapping tool Dataset Reads aligning to genus Bases aligning to genus Reads aligning to species Bases aligning to species Reads aligning to non-genus Bases aligning to non-genus Bases aligning to genus/bases aligning to non-genus Genus Species Strain
BLASR Lister 291 189590 151 97410 172 96260 1.97 Orthopoxvirus Vaccinia Lister
MVA 25 9634 21 8381 12 2951 3.26 Orthopoxvirus Vaccinia MVA
Cowpox 56 23036 56 23036 14 2533 9.09 Orthopoxvirus Cowpox -
E. coli 19 15485 16 12640 7 2083 7.43 Shigella coli -
LAST Lister 151 140099 29 26967 308 274216 0.51 Orthopoxvirus Vaccinia MVA
MVA 44 37511 43 36507 21 18400 2.04 Orthopoxvirus Vaccinia MVA
Cowpox 89 72375 89 72375 50 41077 1.76 Orthopoxvirus Cowpox -
E. coli 17 20399 17 20399 32 35661 0.57 Escherichia coli -