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Table 3 Up- and down-regulated genes between sample types

From: RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

  Pad Cup MG Pink Ripe
Pad - 566 2,390 6,010 6,077
Cup 526 - 1,221 5,270 5,003
MG 1981 919 - 3,583 3,726
Pink 6,765 6,594 3,038 - 18
Ripe 6,821 6,466 5,159 56 -
  1. Each cell in the table represents a comparison between two sample types. Cells above the diagonal report the number of genes that were up-regulated in the later of the two compared stages. Cells below an empty cell report the number of genes that were down-regulated in the later of the two compared stages. Cutoff for differential expression was false discovery rate of 0.001. Stages are shown in order of earlier (Pad) to later (Ripe).