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Table 2 Genes predicted by Cufflinks RNA-Seq analysis or ab initio gene-finding programs

From: RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

Method

Number of genes

Cufflinks (RNA-Seq)

56,087

GeneMark.hmm

4,794

Augustus

1,745

GlimmerHMM

933

454 Scaffolds (454 RNA-Seq)

281

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GigaScience

ISSN: 2047-217X

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