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Table 2 Genes predicted by Cufflinks RNA-Seq analysis or ab initio gene-finding programs

From: RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage-specific alternative splicing

Method Number of genes
Cufflinks (RNA-Seq) 56,087
GeneMark.hmm 4,794
Augustus 1,745
GlimmerHMM 933
454 Scaffolds (454 RNA-Seq) 281