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Table 2 Public databases exploited for the construction of protein profiles

From: Think globally and solve locally: secondary memory-based network learning for automated multi-species function prediction

Database Description
Pfam [30] Protein domain
Protein superfamilies [31] Structural and functional annotations
PRINTS [32] Motif fingerprints
PROSITE [33] Protein domains and families
InterPro [34] Integrated resource of protein families, domains and functional sites
EggNOG [35] Evolutionary genealogy of genes: Non-supervised Orthologous Groups
SMART [36] Simple Modular Architecture Research Tool (database annotations)
Swissprot Manually curated keywords describing the function of the proteins
  at different degrees of abstraction