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Table 3 Metadata items stored in the repository

From: A data repository and analysis framework for spontaneous neural activity recordings in developing retina

Name

Type

Default

Description

Table

key

String

A primary key to indicate the study that the file is associated with. This is typically of the form Wong1993, i.e. surname of first author and year of main paper [29].

Table 2

species

String

Species name; most recordings are from mouse, but we also have ferret recordings [29]. Although ages for both animals are given in postnatal days, ferret and mice have different gestational periods, and so cannot be directly compared.

Table 4

age

Integer

Postnatal age of the animal. For one study [29], adult recordings were represented as age 500 days. (There are currently no embryonic recordings, but these could be represented by negative values; zero is the day of birth.)

Table 5

genotype

String

“wt”

Genotype (of the mouse), with the default “wt” indicating a wild-type mouse.

Table 6

cond

String

“ctl”

A brief description of the conditions under which the spontaneous activity were made. e.g. some recordings were made in dark reared (“dr”) mice, and sometimes pharmacological agents were used. If no condition is supplied, control (“ctl”) is assumed.

Table 7

  1. Values with no default are compulsory. The final column refers to subsequent tables for more details on each name (Static).