TY - JOUR AU - Wong, R. O. L. PY - 1999 DA - 1999// TI - Retinal waves and visual system development JO - Annu Rev Neurosci VL - 22 UR - https://doi.org/10.1146/annurev.neuro.22.1.29 DO - 10.1146/annurev.neuro.22.1.29 ID - Wong1999 ER - TY - JOUR AU - Blankenship, A. G. AU - Feller, M. B. PY - 2010 DA - 2010// TI - Mechanisms underlying spontaneous patterned activity in developing neural circuits JO - Nat Rev Neurosci VL - 11 UR - https://doi.org/10.1038/nrn2759 DO - 10.1038/nrn2759 ID - Blankenship2010 ER - TY - JOUR AU - Wagenaar, D. A. AU - Pine, J. AU - Potter, S. M. PY - 2006 DA - 2006// TI - An extremely rich repertoire of bursting patterns during the development of cortical cultures JO - BMC Neurosci VL - 7 UR - https://doi.org/10.1186/1471-2202-7-11 DO - 10.1186/1471-2202-7-11 ID - Wagenaar2006 ER - TY - JOUR AU - Gentleman, R. C. AU - Carey, V. J. AU - Bates, D. M. AU - Bolstad, B. AU - Dettling, M. AU - Dudoit, S. AU - Ellis, B. AU - Gautier, L. AU - Ge, Y. AU - Gentry, J. AU - Hornik, K. AU - Hothorn, T. AU - Huber, W. AU - Iacus, S. AU - Irizarry, R. AU - Leisch, F. AU - Li, C. AU - Maechler, M. AU - Rossini, A. J. AU - Sawitzki, G. AU - Smith, C. AU - Smyth, G. AU - Tierney, L. AU - Yang, J. Y. H. AU - Zhang, J. PY - 2004 DA - 2004// TI - Bioconductor: open software development for computational biology and bioinformatics JO - Genome Biol VL - 5 UR - https://doi.org/10.1186/gb-2004-5-10-r80 DO - 10.1186/gb-2004-5-10-r80 ID - Gentleman2004 ER - TY - JOUR AU - Goecks, J. AU - Nekrutenko, A. AU - Taylor, J. PY - 2010 DA - 2010// TI - Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences JO - Genome Biol VL - 11 UR - https://doi.org/10.1186/gb-2010-11-8-r86 DO - 10.1186/gb-2010-11-8-r86 ID - Goecks2010 ER - TY - JOUR AU - Delescluse, M. AU - Franconville, R. AU - Joucla, S. AU - Lieury, T. AU - Pouzat, C. PY - 2011 DA - 2011// TI - Making neurophysiological data analysis reproducible: why and how? JO - J Physiol Paris VL - 106 UR - https://doi.org/10.1016/j.jphysparis.2011.09.011 DO - 10.1016/j.jphysparis.2011.09.011 ID - Delescluse2011 ER - TY - JOUR AU - Stevens, J. -. L. R. AU - Elver, M. AU - Bednar, J. A. PY - 2013 DA - 2013// TI - An automated and reproducible workflow for running and analyzing neural simulations using lancet and IPython notebook JO - Front Neuroinform VL - 7 UR - https://doi.org/10.3389/fninf.2013.00044 DO - 10.3389/fninf.2013.00044 ID - Stevens2013 ER - TY - STD TI - Home Page for the Retinal Wave Repository. [http://www.damtp.cam.ac.uk/user/eglen/waverepo], UR - http://www.damtp.cam.ac.uk/user/eglen/waverepo ID - ref8 ER - TY - STD TI - Zip File of HDF5 Files on CARMEN. [https://portal.carmen.org.uk/\#link=URN:LSID:portal.carmen.org.uk:metadata:36156], UR - https://portal.carmen.org.uk/#link=URN:LSID:portal.carmen.org.uk:metadata:36156 ID - ref9 ER - TY - STD TI - HDF5 Home Page. [http://www.hdfgroup.org/HDF5], UR - http://www.hdfgroup.org/HDF5 ID - ref10 ER - TY - JOUR AU - Blankenship, A. G. AU - Hamby, A. M. AU - Firl, A. AU - Vyas, S. AU - Maxeiner, S. AU - Willecke, K. AU - Feller, M. B. PY - 2011 DA - 2011// TI - The role of neuronal connexins 36 and 45 in shaping spontaneous firing patterns in the developing retina JO - J Neurosci VL - 31 UR - https://doi.org/10.1523/JNEUROSCI.5640-10.2011 DO - 10.1523/JNEUROSCI.5640-10.2011 ID - Blankenship2011 ER - TY - JOUR AU - Demas, J. AU - Eglen, S. J. AU - Wong, R. O. L. PY - 2003 DA - 2003// TI - Developmental loss of synchronous spontaneous activity in the mouse retina is independent of visual experience JO - J Neurosci VL - 23 ID - Demas2003 ER - TY - JOUR AU - Demas, J. AU - Sagdullaev, B. T. AU - Green, E. AU - Jaubert-Miazza, L. AU - McCall, M. A. AU - Gregg, R. G. AU - Wong, R. O. L. AU - Guido, W. PY - 2006 DA - 2006// TI - Failure to maintain eye-specific segregation in nob, a mutant with abnormally patterned retinal activity JO - Neuron VL - 50 UR - https://doi.org/10.1016/j.neuron.2006.03.033 DO - 10.1016/j.neuron.2006.03.033 ID - Demas2006 ER - TY - JOUR AU - Hennig, M. H. AU - Grady, J. AU - van Coppenhagen, J. AU - Sernagor, E. PY - 2011 DA - 2011// TI - Age-dependent homeostatic plasticity of GABAergic signaling in developing retinal networks JO - J Neurosci VL - 31 UR - https://doi.org/10.1523/JNEUROSCI.3112-11.2011 DO - 10.1523/JNEUROSCI.3112-11.2011 ID - Hennig2011 ER - TY - JOUR AU - Kirkby, L. A. AU - Feller, M. B. PY - 2013 DA - 2013// TI - Intrinsically photosensitive ganglion cells contribute to plasticity in retinal wave circuits JO - Proc Natl Acad Sci USA VL - 110 UR - https://doi.org/10.1073/pnas.1222150110 DO - 10.1073/pnas.1222150110 ID - Kirkby2013 ER - TY - CHAP AU - Maccione, A. AU - Hennig, M. H. AU - Gandolfo, M. AU - Muthmann, O. AU - van Coppenhagen, J. AU - Eglen, S. J. AU - Berdondini, L. AU - Sernagor, E. PY - 2014 DA - 2014// TI - Following the ontogeny of retinal waves: Pan-Retinal recordings of population dynamics in the neonatal mouse BT - J Physiol ID - Maccione2014 ER - TY - JOUR AU - Stacy, R. C. AU - Demas, J. AU - Burgess, R. W. AU - Sanes, J. R. AU - Wong, R. O. L. PY - 2005 DA - 2005// TI - Disruption and recovery of patterned retinal activity in the absence of acetylcholine JO - J Neurosci VL - 25 UR - https://doi.org/10.1523/JNEUROSCI.1800-05.2005 DO - 10.1523/JNEUROSCI.1800-05.2005 ID - Stacy2005 ER - TY - JOUR AU - Stafford, B. K. AU - Sher, A. AU - Litke, A. M. AU - Feldheim, D. A. PY - 2009 DA - 2009// TI - Spatial-temporal patterns of retinal waves underlying activity-dependent refinement of retinofugal projections JO - Neuron VL - 64 UR - https://doi.org/10.1016/j.neuron.2009.09.021 DO - 10.1016/j.neuron.2009.09.021 ID - Stafford2009 ER - TY - JOUR AU - Sun, C. AU - Warland, D. K. AU - Ballesteros, J. M. AU - van der List, D. AU - Chalupa, L. M. PY - 2008 DA - 2008// TI - Retinal waves in mice lacking the beta2 subunit of the nicotinic acetylcholine receptor JO - Proc Natl Acad Sci USA VL - 105 UR - https://doi.org/10.1073/pnas.0807178105 DO - 10.1073/pnas.0807178105 ID - Sun2008 ER - TY - JOUR AU - McLaughlin, T. AU - Torborg, C. L. AU - Feller, M. B. AU - O’Leary, D. D. M. PY - 2003 DA - 2003// TI - Retinotopic map refinement requires spontaneous retinal waves during a brief critical period of development JO - Neuron VL - 40 UR - https://doi.org/10.1016/S0896-6273(03)00790-6 DO - 10.1016/S0896-6273(03)00790-6 ID - McLaughlin2003 ER - TY - JOUR AU - Sun, C. AU - Speer, C. M. AU - Wang, G. -. Y. AU - Chapman, B. AU - Chalupa, L. M. PY - 2008 DA - 2008// TI - Epibatidine application in vitro blocks retinal waves without silencing all retinal ganglion cell action potentials in developing retina of the mouse and ferret JO - J Neurophysiol VL - 100 UR - https://doi.org/10.1152/jn.90303.2008 DO - 10.1152/jn.90303.2008 ID - Sun2008 ER - TY - JOUR AU - Torborg, C. AU - Wang, C. -. T. AU - Muir-Robinson, G. AU - Feller, M. B. PY - 2004 DA - 2004// TI - L-type calcium channel agonist induces correlated depolarizations in mice lacking the beta2 subunit nAChRs JO - Vision Res VL - 44 UR - https://doi.org/10.1016/j.visres.2004.08.015 DO - 10.1016/j.visres.2004.08.015 ID - Torborg2004 ER - TY - JOUR AU - Hansen, K. A. AU - Torborg, C. L. AU - Elstrott, J. AU - Feller, M. B. PY - 2005 DA - 2005// TI - Expression and function of the neuronal gap junction protein connexin 36 in developing mammalian retina JO - J Comp Neurol VL - 493 UR - https://doi.org/10.1002/cne.20759 DO - 10.1002/cne.20759 ID - Hansen2005 ER - TY - JOUR AU - Torborg, C. L. AU - Hansen, K. A. AU - Feller, M. B. PY - 2005 DA - 2005// TI - High frequency, synchronized bursting drives eye-specific segregation of retinogeniculate projections JO - Nat Neurosci VL - 8 UR - https://doi.org/10.1038/nn1376 DO - 10.1038/nn1376 ID - Torborg2005 ER - TY - JOUR AU - Meister, M. AU - Wong, R. O. AU - Baylor, D. A. AU - Shatz, C. J. PY - 1991 DA - 1991// TI - Synchronous bursts of action potentials in ganglion cells of the developing mammalian retina JO - Science VL - 252 UR - https://doi.org/10.1126/science.2035024 DO - 10.1126/science.2035024 ID - Meister1991 ER - TY - JOUR AU - Xu, H. -. P. AU - Furman, M. AU - Mineur, Y. S. AU - Chen, H. AU - King, S. L. AU - Zenisek, D. AU - Jimmy Zhou, Z. AU - Butts, D. A. AU - Tian, N. AU - Picciotto, M. R. AU - Crair, M. C. PY - 2011 DA - 2011// TI - An instructive role for patterned spontaneous retinal activity in mouse visual map development JO - Neuron VL - 70 UR - https://doi.org/10.1016/j.neuron.2011.04.028 DO - 10.1016/j.neuron.2011.04.028 ID - Xu2011 ER - TY - JOUR AU - Bonomini, M. P. AU - Ferrandez, J. M. AU - Bolea, J. A. AU - Fernandez, E. PY - 2005 DA - 2005// TI - DATA-MEAns: an open source tool for the classification and management of neural ensemble recordings JO - J Neurosci Methods VL - 148 UR - https://doi.org/10.1016/j.jneumeth.2005.04.008 DO - 10.1016/j.jneumeth.2005.04.008 ID - Bonomini2005 ER - TY - JOUR AU - Bologna, L. L. AU - Pasquale, V. AU - Garofalo, M. AU - Gandolfo, M. AU - Baljon, P. L. AU - Maccione, A. AU - Martinoia, S. AU - Chiappalone, M. PY - 2010 DA - 2010// TI - Investigating neuronal activity by SPYCODE multi-channel data analyzer JO - Neural Netw VL - 23 UR - https://doi.org/10.1016/j.neunet.2010.05.002 DO - 10.1016/j.neunet.2010.05.002 ID - Bologna2010 ER - TY - JOUR AU - Wong, R. O. AU - Meister, M. AU - Shatz, C. J. PY - 1993 DA - 1993// TI - Transient period of correlated bursting activity during development of the mammalian retina JO - Neuron VL - 11 UR - https://doi.org/10.1016/0896-6273(93)90122-8 DO - 10.1016/0896-6273(93)90122-8 ID - Wong1993 ER - TY - JOUR AU - Sernagor, E. AU - Grzywacz, N. M. PY - 1996 DA - 1996// TI - Influence of spontaneous activity and visual experience on developing retinal receptive fields JO - Curr Biol VL - 6 UR - https://doi.org/10.1016/S0960-9822(96)00755-5 DO - 10.1016/S0960-9822(96)00755-5 ID - Sernagor1996 ER - TY - JOUR AU - Feller, M. B. AU - Wellis, D. P. AU - Stellwagen, D. AU - Werblin, F. S. AU - Shatz, C. J. PY - 1996 DA - 1996// TI - Requirement for cholinergic synaptic transmission in the propagation of spontaneous retinal waves JO - Science VL - 272 UR - https://doi.org/10.1126/science.272.5265.1182 DO - 10.1126/science.272.5265.1182 ID - Feller1996 ER - TY - JOUR AU - Bansal, A. AU - Singer, J. H. AU - Hwang, B. J. AU - Xu, W. AU - Beaudet, A. AU - Feller, M. B. PY - 2000 DA - 2000// TI - Mice lacking specific nicotinic acetylcholine receptor subunits exhibit dramatically altered spontaneous activity patterns and reveal a limited role for retinal waves in forming ON and OFF circuits in the inner retina JO - J Neurosci VL - 20 ID - Bansal2000 ER - TY - STD TI - CARMEN Portal Home Page. [https://portal.carmen.org.uk], UR - https://portal.carmen.org.uk ID - ref33 ER - TY - JOUR AU - Jessop, M. AU - Weeks, M. AU - Austin, J. PY - 2010 DA - 2010// TI - CARMEN: a practical approach to metadata management JO - Philos Trans A Math Phys Eng Sci VL - 368 UR - https://doi.org/10.1098/rsta.2010.0147 DO - 10.1098/rsta.2010.0147 ID - Jessop2010 ER - TY - JOUR AU - Weeks, M. AU - Jessop, M. AU - Fletcher, M. AU - Hodge, V. AU - Jackson, T. AU - Austin, J. PY - 2013 DA - 2013// TI - The CARMEN software as a service infrastructure JO - Philos Trans A Math Phys Eng Sci VL - 371 UR - https://doi.org/10.1098/rsta.2012.0080 DO - 10.1098/rsta.2012.0080 ID - Weeks2013 ER - TY - CHAP AU - Liang, B. AU - Simonotto, J. AU - Knowles, A. AU - Fletcher, M. PY - 2010 DA - 2010// BT - The Neurophysiology Data Translation Format (NDF) Specification — V1.2.1 ID - Liang2010 ER - TY - JOUR AU - Feller, M. B. PY - 2009 DA - 2009// TI - Retinal waves are likely to instruct the formation of eye-specific retinogeniculate projections JO - Neural Dev VL - 4 UR - https://doi.org/10.1186/1749-8104-4-24 DO - 10.1186/1749-8104-4-24 ID - Feller2009 ER - TY - JOUR AU - Chalupa, L. M. PY - 2009 DA - 2009// TI - Retinal waves are unlikely to instruct the formation of eye-specific retinogeniculate projections JO - Neural Dev VL - 4 UR - https://doi.org/10.1186/1749-8104-4-25 DO - 10.1186/1749-8104-4-25 ID - Chalupa2009 ER - TY - JOUR AU - Novellino, A. AU - Scelfo, B. AU - Palosaari, T. AU - Price, A. AU - Sobanski, T. AU - Shafer, T. J. AU - Johnstone, A. F. M. AU - Gross, G. W. AU - Gramowski, A. AU - Schroeder, O. AU - Jügelt, K. AU - Chiappalone, M. AU - Benfenati, F. AU - Martinoia, S. AU - Tedesco, M. T. AU - Defranchi, E. AU - D’Angelo, P. AU - Whelan, M. PY - 2011 DA - 2011// TI - Development of micro-electrode array based tests for neurotoxicityassessment of interlaboratory reproducibility with neuroactive chemicals JO - Front Neuroeng VL - 4 UR - https://doi.org/10.3389/fneng.2011.00004 DO - 10.3389/fneng.2011.00004 ID - Novellino2011 ER - TY - JOUR AU - MacLaren, E. J. AU - Charlesworth, P. AU - Coba, M. P. AU - Grant, S. G. N. PY - 2011 DA - 2011// TI - Knockdown of mental disorder susceptibility genes disrupts neuronal network physiology in vitro JO - Mol Cell Neurosci VL - 47 UR - https://doi.org/10.1016/j.mcn.2010.12.014 DO - 10.1016/j.mcn.2010.12.014 ID - MacLaren2011 ER - TY - CHAP AU - Teeters, J. L. AU - Benda, J. AU - Davison, A. P. AU - Eglen, S. AU - Gerhard, S. AU - Gerkin, R. C. AU - Grewe, J. AU - Harris, K. AU - Jackson, T. AU - Mouček, R. AU - Pröpper, R. AU - Sessions, H. L. AU - Smith, L. S. AU - Sobolev, A. AU - Sommer, F. T. AU - Stoewer, A. AU - Wachtler, T. PY - 2013 DA - 2013// TI - Considerations for developing a standard for storing electrophysiology data in HDF5 BT - Front Neuroinform ID - Teeters2013 ER - TY - BOOK AU - Xie, Y. PY - 2013 DA - 2013// TI - Dynamic Documents with R and Knitr PB - Francis CY - Hall/CRC The R Series. Boca Raton ID - Xie2013 ER - TY - STD TI - Eglen SJ, Weeks M, Jessop M, Simonotto J, Jackson T, Sernagor E:Supporting Material for “A data repository and analysis framework for spontaneous neural activity recordings in developing retina”. Gigascience Database.http://dx.doi.org/10.5524/100089, UR - http://dx.doi.org/10.5524/100089 ID - ref43 ER - TY - JOUR AU - Quiroga, R. Q. AU - Nadasdy, Z. AU - Ben-Shaul, Y. PY - 2004 DA - 2004// TI - Unsupervised spike detection and sorting with wavelets and superparamagnetic clustering JO - Neural Comput VL - 16 UR - https://doi.org/10.1162/089976604774201631 DO - 10.1162/089976604774201631 ID - Quiroga2004 ER - TY - JOUR AU - Litke, A. AU - Bezayiff, N. AU - Chichilnisky, E. J. AU - Cunningham, W. AU - Dabrowski, W. AU - Grillo, A. AU - Grivich, M. AU - Grybos, P. AU - Hottowy, P. AU - Kachiguine, S. AU - Kalmar, R. S. AU - Mathieson, K. AU - Petrusca, D. AU - Rahman, M. AU - Sher, A. PY - 2004 DA - 2004// TI - What does the eye tell the brain?: development of a system for the large-scale recording of retinal output activity JO - IEEE Trans Nucl Sci VL - 51 UR - https://doi.org/10.1109/TNS.2004.832706 DO - 10.1109/TNS.2004.832706 ID - Litke2004 ER -