Skip to main content

Table 5 Differentially expressed genes between untreated and 5-aza treated mycelia

From: A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum

Gene*

Description

RPKM No aza

RPKM aza

Fold Change

adj. p value

Oxidation-reduction process

GSTUMT00004482001

Flavin-binding monooxygenase-like protein

8

258

33.80

3.51E-09

GSTUMT00009102001

Extracellular dioxygenase

18

196

10.71

1.33E-09

GSTUMT00002834001

Alpha-ketoglutarate-dependent taurine dioxygenase

47

414

8.84

4.30E-09

GSTUMT00006862001

Alcohol dehydrogenase 1

4355

34021

7.81

4.81E-08

GSTUMT00005793001

Bilirubin oxidase

1590

8041

5.06

2.28E-05

GSTUMT00000137001

Cytochrome P450

3

17

5.06

5.85E-04

GSTUMT00006911001

Multicopper oxidase

19

90

4.64

4.87E-03

GSTUMT00008228001

Zinc-binding oxidoreductase

34

147

4.35

3.20E-04

GSTUMT00002706001

Alpha-ketoglutarate-dependent sulfonate dioxygenase protein

4

14

3.61

3.51E-02

GSTUMT00000322001

Fatty acid oxygenase

137

48

0.35

4.81E-02

GSTUMT00000528001

Short-chain alcohol dehydrogenases

334

110

0.33

1.22E-02

GSTUMT00007846001

FAD binding domain-containing protein

172

56

0.33

1.54E-02

GSTUMT00002653001

Pyridoxal reductase

104

31

0.30

5.83E-03

GSTUMT00000530001

FAD binding domain-containing protein

61

18

0.30

8.39E-03

GSTUMT00012134001

Dopa -dioxygenase

4704

1368

0.29

3.10E-03

GSTUMT00000158001

Ferritin ribonucleotide reductase-like protein

54

15

0.28

4.52E-03

GSTUMT00002858001

3-oxoacyl-(acyl-carrier-protein) reductase

22

5

0.25

8.53E-03

GSTUMT00012200001

Malate synthase

71

15

0.21

2.41E-03

GSTUMT00001645001

Zinc-binding alcohol

219

34

0.16

1.06E-06

GSTUMT00006980001

Alcohol dehydrogenase

1022

146

0.14

1.36E-07

GSTUMT00007117001

D-isomer specific 2-hydroxyacid dehydrogenase

4

0.4

0.10

4.66E-02

Transmembrane transport

GSTUMT00001488001

Amino acid permease

163

737

4.53

9.07E-03

GSTUMT00003668001

Carboxylic acid transport protein

20

82

4.03

6.04E-03

GSTUMT00010777001

Mate efflux family protein

16

66

4.03

1.22E-02

GSTUMT00008972001

Lactose permease

16

64

4.02

7.12E-03

GSTUMT00001400001

MFS efflux transporter

86

295

3.44

5.58E-03

GSTUMT00000284001

Mg2+ transporter family-like protein

1082

366

0.34

2.56E-02

GSTUMT00008966001

MFS general substrate transporter

27

9

0.34

4.85E-02

GSTUMT00000070001

MFS multidrug transporter

119

30

0.25

1.20E-03

GSTUMT00004586001

ABC transporter

32

5

0.17

3.72E-02

GSTUMT00005001001

MFS drug efflux

663

84

0.13

4.47E-08

Transcription factors

GSTUMT00005836001

Fungal transcriptional regulatory protein

1

18

17.23

1.91E-09

GSTUMT00010369001

STE12-like transcription factor

1

7

12.50

1.93E-04

GSTUMT00004615001

Binuclear zinc transcription factor

2

10

6.40

1.95E-04

GSTUMT00004613001

GAL4 domain-containing protein

90

402

4.49

1.03E-02

GSTUMT00003504001

C2H2 finger domain

1522

467

0.31

4.98E-03

Metabolic process

GSTUMT00008986001

Glycoside hydrolase family 61 protein

0.2

5

25.60

1.10E-04

GSTUMT00001850001

Endo- -beta-glucanase eng1

94

1499

16.02

4.71E-13

GSTUMT00012011001

Glycoside hydrolase family 28 protein

7

57

7.73

3.97E-04

GSTUMT00005539001

Dynamin family protein

27

195

7.18

2.59E-05

GSTUMT00010778001

Agmatinase 1

230

1316

5.72

1.70E-05

GSTUMT00011981001

Acetyltransferase

298

1376

4.62

1.62E-04

GSTUMT00007852001

Alpha amylase

166

704

4.25

6.60E-04

GSTUMT00003032001

Polysaccharide deacetylase

1222

4444

3.64

3.18E-03

GSTUMT00001583001

Pirin

273

968

3.54

3.99E-03

GSTUMT00005439001

Glycerophosphoryl diester phosphodiesterase

214

758

3.54

1.08E-02

GSTUMT00001660001

Glycoside hydrolase family 16 protein

109

374

3.43

6.66E-03

GSTUMT00006417001

Fatty acid activator

417

1410

3.38

5.16E-03

GSTUMT00007213001

Tat pathway signal sequence

74

239

3.25

1.98E-02

GSTUMT00002512001

Gnat family N-acetyltransferase

99

311

3.14

2.83E-02

GSTUMT00000969001

Branched-chain amino acid aminotransferase

840

270

0.32

9.18E-03

Response to stimuli/mycelium development

GSTUMT00004040001

Regulator of G protein signaling domain protein

54

209

3.84

1.40E-03

GSTUMT00007138001

Osmolarity two-component sensor histidine kinase SLN1

401

1134

2.83

4.81E-02

GSTUMT00004012001

Annexin

72

23

0.33

1.38E-02

Others

GSTUMT00004681001

RNase P RPR2 RPP21 subunit domain-containing protein

52

339

6.53

9.70E-07

GSTUMT00002939001

Allergenic cerato-platanin ASP F13

361

1730

4.80

5.46E-05

GSTUMT00010365001

Putative endo-glucanase

8

39

4.66

1.93E-02

GSTUMT00006611001

Protoglobin protein

999

3827

3.83

3.11E-03

GSTUMT00006718001

Glutathione S-transferase

228

80

0.35

3.10E-02

GSTUMT00008071001

XAA-pro dipeptidase

1272

413

0.32

1.27E-02

GSTUMT00001676001

Arrestin (or S-antigen) N-terminal domain protein

96

31

0.32

1.22E-02

GSTUMT00006632001

P-loop containing nucleoside triphosphate hydrolase

3053

724

0.24

2.20E-04

  1. *One hundred fifteen genes undergo a significant change in expression levels (adjusted p value <0.05) upon 5-aza treatment. Functional annotation of the differentially expressed genes/sequences (either up- or down-regulated) was performed with the Blast2GO suite. Fifty-three genes code for hypothetical proteins. The remaining 62 genes were classified into distinct functional categories. “Oxidation-reduction process” and “transmembrane transport” appear as enriched GO terms (Fisher exact test p = 2.6E-4 and p = 7.9E-3, respectively) among differentially expressed genes.
Back to article page

GigaScience

ISSN: 2047-217X

Contact us