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Table 3 Average methylation levels of genome, genes, and transposable elements

From: A comprehensive resource of genomic, epigenomic and transcriptomic sequencing data for the black truffle Tuber melanosporum

Methylation level* FLM FB ECM 5-aza treated 5-aza untreated
Genome CG 30.3% 28.9% 6.4% 26.4% 25.3%
CHG 8.1% 8.9% 3.4% 7.3% 8.3%
CHH 10.1% 10.3% 3.3% 8.8% 9.9%
Gene CG 0.64% 0.87% 0.84% 0.68% 0.68%
CHG 0.36% 0.61% 0.82% 0.39% 0.41%
CHH 0.39% 0.63% 0.95% 0.43% 0.44%
TE CG 70.51% 69.71% 59.16% 72.87% 72.89%
CHG 14.85% 16.50% 15.31% 13.99% 16.97%
CHH 17.27% 17.85% 17.30% 16.11% 19.24%
  1. ECM: ECtoMycorrhiza; FB: FruitBody; FLM: Free-Living Mycelium.
  2. *The methylation level is estimated based on all cytosines with reads coverage > = 4 in each sample.