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Table 2 Number and size of data files on websites

From: Data access for the 1,000 Plants (1KP) project

File count

Median size (Mb)

Average size (Mb)

Largest size (Mb)

Total size (Mb)

Similar directories

iPlant directory name

68,253

0.0

0.3

481.1

23,116.6

 

onekp_pilot

48,053

0.0

0.3

481.1

14,956.7

 

onekp_pilot/orthogroups

19,220

0.1

0.7

243.8

13,276.5

 

onekp_pilot/orthogroups/alignments

9,610

0.1

0.3

79.8

3,289.6

 

onekp_pilot/orthogroups/alignments/FAA

9,610

0.2

1.0

243.8

9,986.9

 

onekp_pilot/orthogroups/alignments/FNA

28,833

0.0

0.1

481.1

1,680.2

 

onekp_pilot/orthogroups/gene_trees

9,611

0.0

0.1

481.1

583.3

 

onekp_pilot/orthogroups/gene_trees/FAA

9,610

0.0

0.0

0.5

102.2

 

onekp_pilot/orthogroups/gene_trees/FAA/trees

19,222

0.0

0.1

458.0

1,096.8

 

onekp_pilot/orthogroups/gene_trees/FNA

9,611

0.0

0.1

458.0

556.6

 

onekp_pilot/orthogroups/gene_trees/FNA/12_codon

9,610

0.0

0.0

0.5

98.5

 

onekp_pilot/orthogroups/gene_trees/FNA/12_codon/trees

9,611

0.0

0.1

439.1

540.3

 

onekp_pilot/orthogroups/gene_trees/FNA/all_codon

9,610

0.0

0.0

0.5

101.2

 

onekp_pilot/orthogroups/gene_trees/FNA/all_codon/dna_tree

19,919

0.0

0.2

175.2

3,468.8

 

onekp_pilot/phylogenetic_analysis

2,556

0.1

0.1

1.0

292.7

 

onekp_pilot/phylogenetic_analysis/alignments

852

0.0

0.0

0.3

41.8

 

onekp_pilot/phylogenetic_analysis/alignments/FAA

852

0.1

0.1

1.0

125.5

 

onekp_pilot/phylogenetic_analysis/alignments/FNA

852

0.1

0.1

0.9

125.4

 

onekp_pilot/phylogenetic_analysis/alignments/FNA2AA

17,197

0.0

0.1

0.4

1,827.3

 

onekp_pilot/phylogenetic_analysis/gene_trees

1,704

0.0

0.1

0.4

238.3

 

onekp_pilot/phylogenetic_analysis/gene_trees/FAA

2

0.3

0.1

0.4

0.3

852

onekp_pilot/phylogenetic_analysis/gene_trees/FAA/raxmlboot.####

1,704

0.0

0.1

0.4

238.3

 

onekp_pilot/phylogenetic_analysis/gene_trees/FNA

2

0.3

0.1

0.4

0.3

852

onekp_pilot/phylogenetic_analysis/gene_trees/FNA/raxmlboot.####

3,408

0.0

0.1

0.4

476.7

 

onekp_pilot/phylogenetic_analysis/gene_trees/FNA2AA

2

0.3

0.1

0.4

0.3

852

onekp_pilot/phylogenetic_analysis/gene_trees/FNA2AA/raxmlboot.####

2

0.3

0.1

0.4

0.3

852

onekp_pilot/phylogenetic_analysis/gene_trees/FNA2AA/raxmlboot.####.c1c2

10,381

0.0

0.1

0.4

874.0

 

onekp_pilot/phylogenetic_analysis/gene_trees/filtered

2,548

0.0

0.1

0.4

169.3

 

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FAA

1

0.0

0.0

0.0

0.0

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FAA/raxmlboot.####.f25

1

0.2

0.1

0.4

0.2

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FAA/raxmlboot.####.filterlen33

852

0.0

0.0

0.0

3.8

 

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA

1

0.0

0.0

0.0

0.0

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA/raxmlboot.####.f25

6,980

0.0

0.1

0.4

700.9

 

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA

2

0.3

0.1

0.4

0.3

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.GAMMA.2

2

0.3

0.1

0.4

0.3

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.c1c2.GAMMA.2

1

0.0

0.0

0.0

0.0

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.c1c2.f25

1

0.0

0.0

0.0

0.0

852

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.f25

2

0.2

0.1

0.4

0.2

844

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.filterlen33

1

0.3

0.3

0.4

0.3

180

onekp_pilot/phylogenetic_analysis/gene_trees/filtered/FNA2AA/raxmlboot.####.filtered25.GAMMA.2

166

0.0

8.1

175.2

1,348.8

 

onekp_pilot/phylogenetic_analysis/species_level

50

15.0

27.0

175.2

1,348.1

 

onekp_pilot/phylogenetic_analysis/species_level/alignments

15

14.7

14.3

58.3

214.2

 

onekp_pilot/phylogenetic_analysis/species_level/alignments/FAA

35

29.4

32.4

175.2

1,133.9

 

onekp_pilot/phylogenetic_analysis/species_level/alignments/FNA

116

0.0

0.0

0.0

0.6

 

onekp_pilot/phylogenetic_analysis/species_level/trees

276

10.0

17.0

157.4

4,691.1

 

onekp_pilot/taxa

3

9.7

17.0

157.4

51.0

92

onekp_pilot/taxa/####-############

1

30.8

17.0

157.4

36.0

92

onekp_pilot/taxa/####-############/assemblies

2

9.7

7.5

45.2

15.0

92

onekp_pilot/taxa/####-############/translations

5

0.0

0.0

0.0

0.1

 

onekp_pilot/tools

File count

Median size (Mb)

Average size (Mb)

Largest size (Mb)

Total size (Mb)

Similar directories

Contents at SRA (PRJEB4921)

178

1,915.0

2,045.5

3,371.0

364,100.0

 

total of all short reads -- uncompressed, but downloads are compressed to a quarter of these sizes

2

1,915.0

2,045.5

3,371.0

4,091.0

89

expecting per sample -- uncompressed, but downloads are compressed to a quarter of these sizes

  1. In some instances, users will find many directories with similar names, as indicated in this table by hash (#) marks. The total number of directories is given in the preceding column.
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