From: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
Data and Program | Version | k-mer | Scaffold total length (bp) | Scaffold N50 (bp) | Contig total length (bp) | Contig N50 (bp) | Coverage | Time (h) | Peak Memory at Graph Construction (G) |
---|---|---|---|---|---|---|---|---|---|
SOAPdenovo YH old data | v1 | 25 | 2,837,024,602 | 455,380 | 2,327,931,678 | 4,933 | 80.51% | 48^ | 140 |
SOAPdenovo YH new data | v1 | 31 | 2,901,125,426 | 5,806,495 | 2,661,982,498 | 12,709 | 81.16% | 58^ | 107 |
 | v2 Multi-k-mer | 45-61 | 2,905,148,690 | 22,297,138 | 2,799,723,051 | 20,926 | 93.91% | 74^ | 155 |
 | v2 Sparse | 35 | 2,874,598,201 | 18,033,622 | 2,767,141,367 | 18,856 | 93.17% | 78^ | 35 |
 | v2 Sparse & Multi-k-mer | 35-49 | 2,888,094,847 | 17,576,272 | 2,776,209,134 | 18,960 | 93.20% | 81^ | 35 |
ALLPATHS-LG§ YH new data | 42807 | 96 | 2,809,141,261 | 16,195,684 | 2,600,792,533 | 31,101 | 88.53% | 249* | 343 |