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Table 3 Assemblies of Bombus Impatiens

From: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

Assembler

Contigs

Scaffolds

 

Number

N50 (kb)

E-size (kb)

Number

N50 (kb)

E-size (kb)

SOAPdenovo1

64,361

7.9

10.4

52,041

12

25

SOAPdenovo2

12,550

75.7

91.1

5,084

1,352

1,596

ALLPATHS-LG*

-

-

-

-

-

-

  1. *The published ALLPATHS-LG could not be used to assemble this genome because it requires at least one library with overlapping paired-end reads.
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ISSN: 2047-217X

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