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Table 2 Assemblies of S. aureus and R. sphaeroides

From: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

Species

Version

Contigs

Scaffolds

  

Number

N50 (kb)

Errors

N50 corrected(kb)

Number

N50 (kb)

Errors

N50 corrected (kb)

S. aureus

SOAPdenovo1

79

148.6

156

23

49

342

0

342

 

SOAPdenovo2

80

98.6

25

71.5

38

1,086

2

1,078

 

ALLPATHS-LG*

37

149.7

13

117.6

10

1,477

1

1,093

R. sphaeroides

SOAPdenovo1

2,242

3.5

392

2.8

956

105

18

70

 

SOAPdenovo2

721

18

106

14.1

333

2,549

4

2,540

 

ALLPATHS-LG*

190

41.9

31

36.7

32

3,191

0

3,310

  1. All datasets were downloaded fromhttp://gage.cbcb.umd.edu/data/.
  2. *ALLPATHS-LG was using the latest version 42807.