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Table 2 Assemblies of S. aureus and R. sphaeroides

From: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

Species Version Contigs Scaffolds
   Number N50 (kb) Errors N50 corrected(kb) Number N50 (kb) Errors N50 corrected (kb)
S. aureus SOAPdenovo1 79 148.6 156 23 49 342 0 342
  SOAPdenovo2 80 98.6 25 71.5 38 1,086 2 1,078
  ALLPATHS-LG* 37 149.7 13 117.6 10 1,477 1 1,093
R. sphaeroides SOAPdenovo1 2,242 3.5 392 2.8 956 105 18 70
  SOAPdenovo2 721 18 106 14.1 333 2,549 4 2,540
  ALLPATHS-LG* 190 41.9 31 36.7 32 3,191 0 3,310
  1. All datasets were downloaded fromhttp://gage.cbcb.umd.edu/data/.
  2. *ALLPATHS-LG was using the latest version 42807.