Table 1 Evaluation of Assemblathon1 dataset assemblies
From: SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler
| Â | Contig N50 | Contig path NG50 | Scaffold N50 | Scaffold path NG50 | Number of Structural Error | Substitution Error rate | Copy Number Error rate | Genome coverage (%) | Memory (G) | Run time (h) |
|---|---|---|---|---|---|---|---|---|---|---|
V1 | 207,783 | 13,357 | 329,384 | 13,539 | 14,306 | 5.40E-05 | 9.14E-03 | 98.8 | 46 | 7 |
V1.05* | 343,889 | 82,264 | 1,684,436 | 116,651 | 1,878 | 1.20E-05 | 6.75E-03 | 98.8 | 20 | 8 |
V2.0 | 357,238 | 111,365 | 15,077,357 | 170,432 | 1,414 | 4.25E-06 | 2.79E-03 | 98.8 | 20 | 10§ |
ALLPATHS-LG* | 163,633 | 72,480 | 8,185,650 | 210,649 | 1,244 | 2.92E-06 | 6.71E-02 | 98.3 | 100 | 12 |