Table 3 Annotation summary
Scaffolds mapped to: | Scaffolds | mRNAs+ | Repeats | |||||
|---|---|---|---|---|---|---|---|---|
N | (%)# | N | (%)* | % of the scaffold | N | (%)* | % of the scaffold | |
G. gallus genome only | 53,345 | 22% | 1,256 | 5% | 8% | 88,157 | 76% | 7.7% |
Unmapped | 105,030 | 43% | 1,429 | 2% | 22% | 125,470 | 48% | 19.4% |
T. guttata genome only | 26,078 | 11% | 4,206 | 21% | 7% | 87,592 | 93% | 2.1% |
Mismatched | 54,621 | 22% | 12,030 | 27% | 2% | 266,478 | 98% | 1.0% |
G. gallus and T. guttata | 6,873 | 3% | 1,426 | 26% | 3% | 32,994 | 98% | 1.2% |
Total | 245,947 | 100% | 20,347 | 11% | 4% | 600,691 | 59% | 4.3% |