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SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

  • Ruibang Luo1, 2,
  • Binghang Liu1, 2,
  • Yinlong Xie1, 2, 3,
  • Zhenyu Li1, 2,
  • Weihua Huang1,
  • Jianying Yuan1,
  • Guangzhu He1,
  • Yanxiang Chen1,
  • Qi Pan1,
  • Yunjie Liu1,
  • Jingbo Tang1,
  • Gengxiong Wu1,
  • Hao Zhang1,
  • Yujian Shi1,
  • Yong Liu1,
  • Chang Yu1,
  • Bo Wang1,
  • Yao Lu1,
  • Changlei Han1,
  • David W Cheung2,
  • Siu-Ming Yiu2,
  • Shaoliang Peng4,
  • Zhu Xiaoqian4,
  • Guangming Liu4,
  • Xiangke Liao4,
  • Yingrui Li1, 2,
  • Huanming Yang1,
  • Jian Wang1,
  • Tak-Wah Lam2Email author and
  • Jun Wang1Email author
Contributed equally
GigaScience20121:18

DOI: 10.1186/2047-217X-1-18

Received: 24 July 2012

Accepted: 10 December 2012

Published: 27 December 2012

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Open Peer Review reports

Pre-publication versions of this article and author comments to reviewers are available by contacting info@biomedcentral.com.

Original Submission
24 Jul 2012 Submitted Original manuscript
Resubmission - Version 2
Submitted Manuscript version 2
15 Aug 2012 Reviewed Reviewer Report - Alexander J. Nederbragt
22 Aug 2012 Reviewed Reviewer Report - Aleksey Zimin
28 Aug 2012 Reviewed Reviewer Report - Mario Caccamo
4 Nov 2012 Author responded Author comments - Ruibang Luo
Resubmission - Version 3
4 Nov 2012 Submitted Manuscript version 3
30 Nov 2012 Reviewed Reviewer Report - Alexander J. Nederbragt
3 Dec 2012 Reviewed Reviewer Report - Aleksey Zimin
4 Dec 2012 Author responded Author comments - Ruibang Luo
Resubmission - Version 4
4 Dec 2012 Submitted Manuscript version 4
Publishing
10 Dec 2012 Editorially accepted
27 Dec 2012 Article published 10.1186/2047-217X-1-18

How does Open Peer Review work?

Open peer review is a system where authors know who the reviewers are, and the reviewers know who the authors are. If the manuscript is accepted, the named reviewer reports are published alongside the article.. All previous versions of the manuscript and all author responses to the reviewers are also available.

You can find further information about the peer review system here.

Authors’ Affiliations

(1)
BGI HK Research Institute
(2)
HKU-BGI Bioinformatics Algorithms and Core Technology Research Laboratory & Department of Computer Science, University of Hong Kong
(3)
School of Bioscience and Bioengineering, South China University of Technology
(4)
School of Computer Science, National University of Defense Technology

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